PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_24206.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 423aa    MW: 46968.9 Da    PI: 5.7259
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_24206.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573109.52.3e-3486187197
                   DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk.....spsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkeps 79 
                              klfqrlw++eDe+ lL+G++++++++g      +  +  d++afy+++k++ +++++k+qlveK+rrLKkK+++ ++k+ sgk+++
  Sme2.5_24206.1_g00001.1  86 KLFQRLWTDEDEVELLRGFLEYTTQRGLnnssqH--HhyDTTAFYDQIKSKFQLDFNKNQLVEKLRRLKKKYRTVMSKMTSGKDFA 169
                              579************************9865422..2369********************************************** PP

                   DUF573  80 fskehdqkifelskkiWg 97 
                              f+++hdq +fe+s+kiW 
  Sme2.5_24206.1_g00001.1 170 FKSAHDQLTFEISSKIWS 187
                              *****************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.6E-3288187IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MSFDPMAHQS DDNLDYDVDV DGDDDSNSSP SVAGEVTIAV AGVTNSDSAS IQLNRKRPRI  60
DDFAIPVILP GMTGKKPAGT FDESRKLFQR LWTDEDEVEL LRGFLEYTTQ RGLNNSSQHH  120
HYDTTAFYDQ IKSKFQLDFN KNQLVEKLRR LKKKYRTVMS KMTSGKDFAF KSAHDQLTFE  180
ISSKIWSRGG SYDRSSPGGS VGFSAQQEDG GFDDEDHLNP TPNPNPNSDS IVIYHSPKFN  240
LNSNPNGIDI KTARSRIRSS PAPKAIKVEQ QSYLPSGART IRPTPMPMPM PTQIPTPTPT  300
TNSIPVAAAP VAEFAPAPTT VAAPVPSLVE ETVRNCVTPI FKELLNNFMN MNGPARGFGF  360
GGMGMSPFPL GFGGGAMSME MMGDEKWRKQ QMLELEVYLK RLELIQEQVK EQLEELRSME  420
SKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230126.10.0PREDICTED: uncharacterized protein LOC101245401
TrEMBLK4B0H60.0K4B0H6_SOLLC; Uncharacterized protein
STRINGSolyc01g097890.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.28e-47DNA-binding storekeeper protein-related transcriptional regulator